PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011086306.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 336aa MW: 36908.4 Da PI: 6.8955

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.9e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_011086306.1 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-32	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-18	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MYQPKAVPSS SLAHGNPVVQ TQPLDCSASR MDPISGSSNL NNNPNLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGNKVEKK 120 ESGDIISSLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ 180 RLSGVLSEEP GLGVPAPGTQ DIHPESDNKT EPATPGPTSE PPFPDKPAKE HIPAKSPSVD 240 ESFSSHHEPL TPDSGCHVTS SVESPSERPG KKQRGRADVA FTKPEMVLTH SILESSLSPP 300 YQQPHSIFLT REQFDHSSGL SIGSENKLER VPESNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086306.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR092428	1e-57	KR092428.1 Tectona grandis MYB transcription factor 1 (MYB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086306.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_020552142.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-124	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2G9GE95	0.0	A0A2G9GE95_9LAMI; Uncharacterized protein
STRING	VIT_00s0475g00040.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-100	G2-like family protein