PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086077.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LSD
Protein Properties Length: 337aa    MW: 36745.8 Da    PI: 5.1602
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD120.39.5e-07246268123
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                     Cg Cr+l  YPrGA+ V+C+ C 
  XP_011086077.1 246 CGTCRKLCLYPRGAKWVQCPGCR 268
                     ********************997 PP
2zf-LSD136.48.9e-12284308125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC +lL+YP G+p+V+C+ C++V
  XP_011086077.1 284 CGGCSVLLMYPHGSPAVQCTTCHFV 308
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-8243273IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-5246268IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:2.20.25.1002.3E-4262310IPR023407Ribosomal protein S27e, zinc-binding domain
TIGRFAMsTIGR010531.2E-8281309IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-10284308IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEEKKQEFA TEGEEDDDGP PPGFQCIITP RPPQEEKAEA DDDEEEDGPP PGFHSVGPKP  60
PPSLPPDMAR SSKQDDIDDD EDGPPPGWEF STLVNALPKP LSNTTDIKTE SNDELDEGPP  120
PGWETVLSHQ MPPPRTPPLQ LSSTVSSNIE MGSKQNITRN DEVLPSASQG TTTPRHSSPA  180
TPLIHQLPSS ELPGDKGKKE EEKRTGDKRP TSGHQPVSPR QQLPSSTRPA TPATVSSSSE  240
RAQLVCGTCR KLCLYPRGAK WVQCPGCREV NFVLEAHDIG QVKCGGCSVL LMYPHGSPAV  300
QCTTCHFVTE IGAHNRRPPL SVQHAQAQRR RRPNRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830377.11e-108PREDICTED: formin-like protein 3 isoform X1
TrEMBLA0A2G9HP831e-114A0A2G9HP83_9LAMI; Uncharacterized protein
STRINGMigut.H01490.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116422223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-30lsd one like 2