PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34125.6 Da PI: 9.7044 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.3e-34 | 54 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++ e+L++kv +++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_011086035.1 54 LPAGVKFDPSDQEIL-EHLEAKVLSDTrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHsdang 143 799***********9.99****999996665442...133334666646**********.566677888******************85545554 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v + g+ +g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_011086035.1 144 gETRWHKTGKTRPVSA-AGRIKGHKKILVLYtnYGRQKKPEKTNWVMHQYHL 194 4678***********9.999***********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-38 | 41 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.828 | 54 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-15 | 55 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MIMIETALQI VSANNNVVSS RTDQQLRAIV CPSCGHTIKH HQDHQSGVQD LPGLPAGVKF 60 DPSDQEILEH LEAKVLSDTR KLHPLVDEFI PTIEGEDGIC YTHPEKLPGV SKDGQVRHFF 120 HRPSKAYTTG TRKRRKVHSD ANGGETRWHK TGKTRPVSAA GRIKGHKKIL VLYTNYGRQK 180 KPEKTNWVMH QYHLGDNEEE KDGELVLSKV FYQTQPRQCS SSSMKGSLVI STTTARSRSH 240 LSDQNPLMKN PSLAEYYGPP PPPFISYTTV GSQNINRDSP PPMIPNLVVQ DDASSLIRLP 300 SGGSKGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-11 | 54 | 194 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086035.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ064645 | 2e-56 | KJ064645.1 Sesamum indicum clone TilSSR_35846 microsatellite Sesame_35846 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086035.1 | 0.0 | NAC domain-containing protein 10 | ||||
Refseq | XP_020551495.1 | 0.0 | NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 1e-116 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2G9GL67 | 1e-159 | A0A2G9GL67_9LAMI; Uncharacterized protein | ||||
STRING | EOY28152 | 1e-143 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-119 | NAC domain containing protein 10 |