PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085744.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 343aa MW: 39005.1 Da PI: 6.4262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++ +++ e+i++vd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_011085744.1 16 LPPGFRFHPTDEELITHYLSPKVLDSGFSA-EAIADVDLNKVEPWDLPWKAKMGEKEWYFFCLRDRKYPTGLRTNRATDAGYWKATGKDKEIYR- 108 79*************************9.89***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grap+gekt+Wvmheyrle XP_011085744.1 109 AKTLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 142 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-65	11	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	16	166	IPR003441	NAC domain
Pfam	PF02365	8.2E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MERLSCFNTP DEPMELPPGF RFHPTDEELI THYLSPKVLD SGFSAEAIAD VDLNKVEPWD 60 LPWKAKMGEK EWYFFCLRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYRAK TLVGMKKTLV 120 FYRGRAPRGE KTNWVMHEYR LEGKHSMRNL PKTAKNEWVI CRVFKKISGG KKVHISGLMR 180 SIDCGTADAQ PTDLPQLTDL SSEENQTRIT SAAEGSNLTC FSNPIEEHLD KSVDELTSSS 240 KPTHFPHFPF TFPKVSNPSS NLSSQTVSCS GNAHWPDSVT MQDESILRLL LEKNGPFMKQ 300 NVKAEFSEDI GINTADLGFK PYDDQEFPII STGPLDLDCF WNY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MERLSCFNTP DEPMELPPGF RFHPTDEELI THYLSPKVLD SGFSAEAIAD VDLNKVEPWD  60
LPWKAKMGEK EWYFFCLRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYRAK TLVGMKKTLV  120
FYRGRAPRGE KTNWVMHEYR LEGKHSMRNL PKTAKNEWVI CRVFKKISGG KKVHISGLMR  180
SIDCGTADAQ PTDLPQLTDL SSEENQTRIT SAAEGSNLTC FSNPIEEHLD KSVDELTSSS  240
KPTHFPHFPF TFPKVSNPSS NLSSQTVSCS GNAHWPDSVT MQDESILRLL LEKNGPFMKQ  300
NVKAEFSEDI GINTADLGFK PYDDQEFPII STGPLDLDCF WNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	10	172	11	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	10	172	11	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	10	172	11	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	10	172	11	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	10	172	14	174	NAC domain-containing protein 19
3swm_B	4e-56	10	172	14	174	NAC domain-containing protein 19
3swm_C	4e-56	10	172	14	174	NAC domain-containing protein 19
3swm_D	4e-56	10	172	14	174	NAC domain-containing protein 19
3swp_A	4e-56	10	172	14	174	NAC domain-containing protein 19
3swp_B	4e-56	10	172	14	174	NAC domain-containing protein 19
3swp_C	4e-56	10	172	14	174	NAC domain-containing protein 19
3swp_D	4e-56	10	172	14	174	NAC domain-containing protein 19
4dul_A	4e-56	10	172	11	171	NAC domain-containing protein 19
4dul_B	4e-56	10	172	11	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085744.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085744.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G9H007	1e-155	A0A2G9H007_9LAMI; Uncharacterized protein
STRING	cassava4.1_010528m	1e-141	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-126	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]