PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085518.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 262aa    MW: 30143.4 Da    PI: 9.947
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1817981098
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +++ +l++p +fa++h+     + ++ l +es +sW vk+  ++  +r+ + +GW eF k n+L+egDf+vF+++grs+f  +v +f+
  XP_011085518.1 17 DFST-QLSIPVEFARRHKDM--LHGKVCLVTESQESWAVKI--EQVNERHCFIGGWPEFLKGNQLEEGDFLVFYFVGRSTF--RVAIFS 98
                    4444.6***********644..4558***************..88888889999***********************9999..888875 PP
2B340.35.8e-131542361496
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 
                       l +p  fa++ g+    + ++tl+d++gr+W v+l  r ++ r+  ++GW+eF  a++L +g ++ ++ + g+ ++  + vkv
  XP_011085518.1 154 YHLFFPAAFAAKTGLRR--KSKITLRDPRGRKWPVTLFTRERPHRIQTSTGWNEFLAAQKLFVGSIISLESVpGSdDDDLFQVKV 236
                     34899********9984..449***************99******99********************999544443444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-243102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-254102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.9447100IPR003340B3 DNA binding domain
CDDcd100174.76E-19898No hitNo description
SMARTSM010197.2E-1710100IPR003340B3 DNA binding domain
PfamPF023625.2E-161698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-14139239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15139238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.716141240IPR003340B3 DNA binding domain
CDDcd100174.47E-10142238No hitNo description
SMARTSM010192.0E-5144240IPR003340B3 DNA binding domain
PfamPF023628.3E-11152230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNSSLNRPSF FKPLIGDFST QLSIPVEFAR RHKDMLHGKV CLVTESQESW AVKIEQVNER  60
HCFIGGWPEF LKGNQLEEGD FLVFYFVGRS TFRVAIFSMD GCDKWYPSSD VDGIQEPGIY  120
WNFPVKQECG SGDSCDKTSE IPRFSVQLRR YSTYHLFFPA AFAAKTGLRR KSKITLRDPR  180
GRKWPVTLFT RERPHRIQTS TGWNEFLAAQ KLFVGSIISL ESVPGSDDDD LFQVKVLKNR  240
GKGELFRAFN KNLGRPQLSR RL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085518.10.0B3 domain-containing protein REM5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.15e-14B3 family protein