PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085274.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 312aa    MW: 34808.3 Da    PI: 6.5765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.95e-34171228259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp+vv++tYeg+Hnh+
  XP_011085274.1 171 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPSVVITTYEGQHNHH 228
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-35155230IPR003657WRKY domain
SuperFamilySSF1182907.19E-30162230IPR003657WRKY domain
PROSITE profilePS5081132.73165230IPR003657WRKY domain
SMARTSM007747.7E-40170229IPR003657WRKY domain
PfamPF031061.1E-26171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSEEFREFYY HQPFHDDQRR VSGGATNFLY SATANSSADD SSSLHPQYLQ MFDPSYLSFT  60
EFLHGSAHHN SLSTTFGSTS EAVSALKEED KPVVGGGETP ATPNSSISSA STEAAAGDQE  120
DSNKGKKESQ VKETAEDGED TSKGKAKKKG EKKERQPRFA FMTKSEVDHL EDGYRWRKYG  180
QKAVKNSPYP RSYYRCTTQK CPVKKRVERS FQDPSVVITT YEGQHNHHVP ATLRGNVAGM  240
FASSMLSPAP PLTLDGHSFP QELLVQMPHL YSYVDGGSTS NLYHQQQQFQ QFPVDYGLLQ  300
DIIPPGFPKQ EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-30160231778Probable WRKY transcription factor 4
2lex_A9e-30160231778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231802e-32KM823180.1 Salvia miltiorrhiza WRKY protein (WRKY57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085274.10.0probable WRKY transcription factor 71
TrEMBLA0A2G9I1H71e-135A0A2G9I1H7_9LAMI; Uncharacterized protein
STRINGXP_009616483.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-55WRKY DNA-binding protein 71