PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28020.6 Da PI: 7.8207 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l ++v ++G g+W+++a g+ R +k+c++rw +yl XP_011084729.1 15 KGLWSPDEDQKLRNYVLKHGHGCWSSVAINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.4e-15 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ E+e + +++ lG++ W+ Ia++++ gRt++++k++w++ XP_011084729.1 68 RGAFSVAEEETVLSLHRILGNK-WSQIAQHLP-GRTDNEIKNYWHS 111 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.432 | 10 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.66E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-10 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.127 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.64E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVANRALKSI KKHKKGLWSP DEDQKLRNYV LKHGHGCWSS VAINAGLQRN GKSCRLRWIN 60 YLRPGLKRGA FSVAEEETVL SLHRILGNKW SQIAQHLPGR TDNEIKNYWH SCLKKRRVVK 120 MSETEAQTTK NNYKYGEIRG LESSTSFQHI ERLAQQCSFP KVLFAEWLSF DHFKNEGNLD 180 NHSSSPEDNL VDGLLVNEGT SCSESDRKQD EVSVDDMLRL EDLESCLIDY FPGEFCMSYD 240 MYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 15 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084729.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084729.1 | 0.0 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-56 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A2G9H7G8 | 6e-85 | A0A2G9H7G8_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | cassava4.1_026616m | 2e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 4e-61 | myb domain protein 45 |
Publications ? help Back to Top | |||
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