PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 425aa MW: 46628.6 Da PI: 8.7807 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 46 | 71 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_011084651.1 46 GEPDCSYYIRTGLCRFGSTCRFNHPP 71 6899********************97 PP | |||||||
2 | zf-CCCH | 38 | 2.7e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_011084651.1 92 QSECQYYLKTGTCKFGATCKFHHPR 116 679********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.4e-12 | 140 | 162 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r+G+Ck+G++CkF+H++ XP_011084651.1 140 ECAYYMRNGQCKFGSTCKFHHPQ 162 7********************97 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 286 | 312 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_011084651.1 286 PGQPECQFYMKTGDCKFGAVCKFHHPR 312 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 332 | 358 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_011084651.1 332 PGEPLCVFYSRYGICKFGPSCKFDHPM 358 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 46 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 50 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.418 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-6 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-10 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 140 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 285 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 285 | 312 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 287 | 312 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.58E-6 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 291 | 313 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.15 | 331 | 359 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 333 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 334 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 336 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MSRVSVTAVA SSASSIHLQP HHQDALWQMN TTREQIDSGP YPVREGEPDC SYYIRTGLCR 60 FGSTCRFNHP PNRKLAIATA RMKGEYPERI GQSECQYYLK TGTCKFGATC KFHHPRDKAG 120 IAGRVALNVL GYPLRPNEIE CAYYMRNGQC KFGSTCKFHH PQPSNMMVSV RGSAVYPPIH 180 SPTAGQLSFP LSRASFIPSP RWQSPSSYAP LVMPQGVVSV PGWNTYSGQL GSVLSSENQH 240 PAAGNSQKDG GSLQNETGDA GTQFHSGSLP MGYYAFQRDN VFPERPGQPE CQFYMKTGDC 300 KFGAVCKFHH PRERLIPVPD CILSPIGLPL RPGEPLCVFY SRYGICKFGP SCKFDHPMTV 360 FGYNAGASSS TDSPAIRRFL ASSSGTVALS FSPDRLVEAG STNNRRLSLS ETRQKPSGDN 420 NIDSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551199.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2G9GDR8 | 0.0 | A0A2G9GDR8_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.F01877.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |