PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084435.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 667aa MW: 73769.1 Da PI: 6.4697

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	49	70	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H XP_011084435.1 49 KCEKCPRQFCSPINYRRHIRVH 70 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0068	48	70	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.182	48	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MPVAKLCTSG IVNAMKSEGG NDYLDTFIRQ AIDLPGWPLM TPVKVQMQKC EKCPRQFCSP 60 INYRRHIRVH RRSLNVNKES HRNRELLAEF WDKLSPEEAK EIVSLNDVML KEIPGSSVIR 120 ALTSSLQKPG LWTLPQAYVK AGSTLLDIVQ AKPSRLPLSS QELFGILDDA SETTFLCGGA 180 SESLQKYVFD GEAANNSMEL KNLVASTSFL FEQKLVKAWV ADKDAEALRC HKLLVEEEEA 240 AQKKQAELLE RKKQKKLRQK EQKVKEQFYE CNADLDVPIG AADGLLDVPI GAADGPISAE 300 GFGSSSPSDS SSNSIEAAPN LDSCIEPIQS KSIESDKDRE PKIDANTECL HQGDCQSNEP 360 QMVAENCHQH LANNHWQVTG SQMGNHASQN LQLLEPEFGQ AIGLSEDHPL LNGSKVWTKE 420 HKTENNGESL KPSLSGEICH QMEESNCEVI IGSISVTVNN PAAQQQHCHP YDDQDTSRTQ 480 HAMLNNTSEK LLKEAAAQSG PNRMASKLWR PVSHGEAKRI SSIERRNKDS ERAVPSGKVH 540 DRIMSSERCM PSQSADIDDH DDVKQNNIPC DKNDLKGNVA FSSIAAKEFL SQRWKEAISA 600 DHVKLVLSVG HEPPGCSAIQ HDNSMASNNP DRQECSAVCR SGAQVKFRTK PDKCLKTKYI 660 AKPKAIT

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MPVAKLCTSG IVNAMKSEGG NDYLDTFIRQ AIDLPGWPLM TPVKVQMQKC EKCPRQFCSP  60
INYRRHIRVH RRSLNVNKES HRNRELLAEF WDKLSPEEAK EIVSLNDVML KEIPGSSVIR  120
ALTSSLQKPG LWTLPQAYVK AGSTLLDIVQ AKPSRLPLSS QELFGILDDA SETTFLCGGA  180
SESLQKYVFD GEAANNSMEL KNLVASTSFL FEQKLVKAWV ADKDAEALRC HKLLVEEEEA  240
AQKKQAELLE RKKQKKLRQK EQKVKEQFYE CNADLDVPIG AADGLLDVPI GAADGPISAE  300
GFGSSSPSDS SSNSIEAAPN LDSCIEPIQS KSIESDKDRE PKIDANTECL HQGDCQSNEP  360
QMVAENCHQH LANNHWQVTG SQMGNHASQN LQLLEPEFGQ AIGLSEDHPL LNGSKVWTKE  420
HKTENNGESL KPSLSGEICH QMEESNCEVI IGSISVTVNN PAAQQQHCHP YDDQDTSRTQ  480
HAMLNNTSEK LLKEAAAQSG PNRMASKLWR PVSHGEAKRI SSIERRNKDS ERAVPSGKVH  540
DRIMSSERCM PSQSADIDDH DDVKQNNIPC DKNDLKGNVA FSSIAAKEFL SQRWKEAISA  600
DHVKLVLSVG HEPPGCSAIQ HDNSMASNNP DRQECSAVCR SGAQVKFRTK PDKCLKTKYI  660
AKPKAIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	256	ERKKQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084435.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084435.1	0.0	uncharacterized protein LOC105166686 isoform X2
TrEMBL	A0A4D9BG75	0.0	A0A4D9BG75_SALSN; Uncharacterized protein
STRING	VIT_16s0050g00700.t01	0.0	(Vitis vinifera)
STRING	Migut.F01102.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-81	C2H2-like zinc finger protein