PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084413.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 302aa    MW: 34041.1 Da    PI: 8.0586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-163077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lvd ++q G  tW+  +r  g+ R++k+c++rw +yl
   XP_011084413.1 30 KGAWSAEEDKILVDFITQNGQTTWRNLPRLAGLLRCGKSCRLRWTNYL 77
                     79******************************99************97 PP
2Myb_DNA-binding50.45e-1683128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+  +++++  lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_011084413.1  83 RGPFSPDEENTIIHLHSTLGNK-WAAIASNLP-GRTDNDIKNFWNSHL 128
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.612577IPR017930Myb domain
SuperFamilySSF466891.2E-2627124IPR009057Homeodomain-like
SMARTSM007171.9E-102979IPR001005SANT/Myb domain
PfamPF002498.0E-133077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-203184IPR009057Homeodomain-like
CDDcd001677.37E-83277No hitNo description
PROSITE profilePS5129424.01878132IPR017930Myb domain
SMARTSM007171.0E-1582130IPR001005SANT/Myb domain
PfamPF002491.8E-1583128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2685131IPR009057Homeodomain-like
CDDcd001676.95E-1185128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGKKRDEMKE EKKKKKKGKK ACCEREGLRK GAWSAEEDKI LVDFITQNGQ TTWRNLPRLA  60
GLLRCGKSCR LRWTNYLRPD IKRGPFSPDE ENTIIHLHST LGNKWAAIAS NLPGRTDNDI  120
KNFWNSHLRK RFSGEVLDQT SSLSKSVDTK HESPQTRLLV QSENVRVETA ESHLSSKSED  180
DYLLCLWNSK VGDSFPSDRE GAGAQSPASQ TSSYIRTIES GSRARNLSEP CKKTSFPGET  240
DQKVKLLNCK KEAEEFGSNS DDSKSDDSSD TMLKILLDFP MGSNEMEFLQ DPFDDVSTGT  300
LH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-242813225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216KKRDEMKEEKKKKKK
21119KKKKKKGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084413.10.0myb-related protein 308-like
TrEMBLA0A2Z7BPG71e-102A0A2Z7BPG7_9LAMI; Uncharacterized protein
STRINGMigut.F01122.1.p2e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-68myb domain protein 17