PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084402.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 302aa    MW: 33821.1 Da    PI: 5.4771
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82.1e-34131032101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+ +g++f+v++++efa+++LpkyFkh+nf+SF+RQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_011084402.1  13 FLTKTYQLVDDHAIDDVISWNIDGSAFIVWNPTEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKKLLRD 98 
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i r+k
  XP_011084402.1  99 ILRRK 103
                     *9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-36896IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-549102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3211102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAADAPRLLA TPFLTKTYQL VDDHAIDDVI SWNIDGSAFI VWNPTEFARD LLPKYFKHNN  60
FSSFIRQLNT YGFRKVVPDR WEFSNDCFRR GEKKLLRDIL RRKIATPSLA AKATASVQLT  120
PAAPPRTLSP SDSGEEQVVS SSISPPGARE FSSNTAELIG ENERLRKENV QLNKELTHMK  180
NLCNNIYVLV SNYSGSIIAD REHSCKLILT ETALRPLDLL PMTRFCEEMA TAANGGGENN  240
IRPSAEEISA RLFGVPIGAK RGREIEGTSA EDEMHLQLQL PGRDSKYEPL DEDERGDHQE  300
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-251310229129Heat shock factor protein 1
5d5v_B9e-251310229129Heat shock factor protein 1
5d5v_D9e-251310229129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084402.10.0heat stress transcription factor B-2b-like
SwissprotQ9SCW45e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2Z4K5C01e-159A0A2Z4K5C0_TECGR; HSF2 protein
STRINGMigut.F00357.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-88heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]