PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084246.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WOX
Protein Properties Length: 351aa    MW: 39789.2 Da    PI: 6.6477
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.93.2e-2278137357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  XP_011084246.1  78 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 137
                     7*****************99**************************************97 PP
2Wus_type_Homeobox115.72.3e-3777139365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_011084246.1  77 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 139
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-575142IPR001356Homeobox domain
SuperFamilySSF466892.52E-1278143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-978137IPR009057Homeodomain-like
PfamPF000465.7E-2078137IPR001356Homeobox domain
CDDcd000861.91E-679139No hitNo description
PROSITE profilePS5007111.25683138IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMWMMGYNDG AEFNSMQDPF SGRKLRPLMP RPAAAAATTS TTPPCLTRIH GTDHLLAFNH  60
HLAMAEPNRS TQQVVVSSRW NPTPEQLQTL EELYRRGTRT PSAEQIQHIT AQLRRYGKIE  120
GKNVFYWFQN HKARERQKRR RQLESLSDEQ PHNNNHTENG EKRETSGANR TAFEVEQTKN  180
WASPTNSSTI AEKTVCKQMG TAKAECKADG WVQFDAEFPQ QRRNATWQIM RCLSCSSSPT  240
TNLINPSSAP TVPSTTTIPS TTTKLPPPPP HQQDFINLFL QPYPNLDHRA GGDEAQTLEL  300
FPLESSGGPQ RRQNHDLCAV EEEEEEEEED SGGGYSHVTP QQFFEFLPLK N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0544202e-53KJ054420.1 Sesamum indicum clone TilSSR_25621 microsatellite Sesame_25621 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084246.10.0WUSCHEL-related homeobox 1
TrEMBLA0A2G9GEN61e-135A0A2G9GEN6_9LAMI; Uncharacterized protein
STRINGXP_009587628.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-41WUSCHEL related homeobox 1