PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084002.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 388aa    MW: 41258.5 Da    PI: 6.7979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35.1e-12208253555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  XP_011084002.1 208 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 253
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.20E-13201257No hitNo description
SuperFamilySSF474594.32E-17201263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16205262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQPVSREFGA MNNINPLLNQ HQISSSLQEI QLPQMLGSSH FDPPTSNDDF LEQILSSVPS  60
ASFPWAEDHA PPHMEEQPAA VLASKLRQHQ ISNGALKALM LQQQLLLSRG LRSPTGGADD  120
ALLPMPHGDQ NDAVDGTSFK SSSLVNDAAV KALFDGNFTG SLCQTLNQPQ HFHHPQLQTQ  180
NLGTGGGAAA NQPARKVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS  240
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRSGNGTAQT ASTSNTKDGG  300
GMTVTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATSHSRKP PAASNPPTSP  360
SMSVLTVQSA TIGGGEPCLR EAPSVSQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551186.10.0LOW QUALITY PROTEIN: transcription factor bHLH69-like
SwissprotQ8S3D57e-80BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0H3Y7K90.0A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.J01333.1.p1e-158(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-59LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]