PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083994.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family RAV
Protein Properties Length: 352aa    MW: 39588.3 Da    PI: 5.501
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-104289154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ kl+
  XP_011083994.1 42 SKFKGVV-SQQNGHWGAQIYA------NhQRVWLGTFKSEVEAAMAYDSAAIKLR 89
                    79****6.5558******999......44**********99************98 PP
2B383.71.7e-26160246183
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pkk+a ++      gg    +++lt++d + + W+++++y+++s+++v+t+GW++Fvk++gL+ +D v+F 
  XP_011083994.1 160 FEKELTPSDVSKLNRLVIPKKYAVKYfprgdgGG--SDDVELTFYDVTMKPWKFRYCYWRSSQSFVFTRGWNRFVKEKGLRPRDRVIFF 246
                     99****************************7533..3789********************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-2342100No hitNo description
SuperFamilySSF541711.05E-144299IPR016177DNA-binding domain
PfamPF008472.1E-54289IPR001471AP2/ERF domain
PROSITE profilePS5103216.8584398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-174398IPR001471AP2/ERF domain
SMARTSM003807.4E-2043104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.5E-31157252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-26159251IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-24159245No hitNo description
SMARTSM010191.5E-18160269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28160269IPR003340B3 DNA binding domain
PfamPF023626.0E-23160246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEEPSILSGA TTYRSGEVSD SNSSSHQFPL KHPANDWKAS SSKFKGVVSQ QNGHWGAQIY  60
ANHQRVWLGT FKSEVEAAMA YDSAAIKLRS GDSHRNFPWT AVTVHEPKFQ SQLSTEVVLS  120
MIKDGSYAAK FSDYLRDEVQ EGCKLATLHG AKGAKWRQLF EKELTPSDVS KLNRLVIPKK  180
YAVKYFPRGD GGGSDDVELT FYDVTMKPWK FRYCYWRSSQ SFVFTRGWNR FVKEKGLRPR  240
DRVIFFAYEC GEGFDEYQKL CMIDVVYNNG DVVEGNVDGS VASPLKIGQP GFDGCDEVEI  300
EEKMDFQAGF EQVENESEDE NNGGEVMKDI DVGSSSINAE KKGLKLFGVQ II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2615924513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083994.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083995.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083998.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083999.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550901.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550902.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550903.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550904.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6883e-90RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2G9HEB31e-153A0A2G9HEB3_9LAMI; Uncharacterized protein
STRINGMigut.K00338.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-92RAV family protein