PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 365aa MW: 41740.1 Da PI: 8.3709 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.9 | 2.6e-20 | 35 | 113 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l +pkkfa++ +k ++ t+ l+ +sg +W+v l ++++ +l+ GWk Fv+++ L+e+D+++Fk++g+s+f v +f+ XP_011083780.1 35 QQLAIPKKFANNLREKMAG--TVALKGPSGHEWSVGL--VTNGDMLLLGHGWKAFVEDHSLEENDILIFKYNGNSRF--EVLMFD 113 679*******666655444..9***************..99999*****************************9999..666665 PP | |||||||
2 | B3 | 45 | 1.9e-14 | 235 | 326 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+ v+ s+v + +++p + a++h + +s ++ l +g++W k+ y++++g+ lt+GWk+Fv +n L+e D+++F l+ g+ + l XP_011083780.1 235 FIVVMRASHVYRGFFMSVPAEWARRHLPN--KSHDIELH-ANGNVWIAKYHYKGYGGG--LTGGWKNFVMENFLEESDVCLFDLIsGTdDAIILD 324 788999********************644..55678855.69*************999..9**********************994443444445 PP EE CS B3 94 vk 95 vk XP_011083780.1 325 VK 326 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-22 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.707 | 22 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-23 | 22 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.9E-18 | 25 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.02E-20 | 25 | 113 | No hit | No description |
Pfam | PF02362 | 1.9E-17 | 35 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 229 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-18 | 230 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.65E-14 | 234 | 329 | No hit | No description |
Pfam | PF02362 | 3.3E-13 | 235 | 319 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.998 | 235 | 331 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-10 | 235 | 331 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MVRDCMDCRK WEEDMYWSRF QTVQFCQVLT GRFDQQLAIP KKFANNLREK MAGTVALKGP 60 SGHEWSVGLV TNGDMLLLGH GWKAFVEDHS LEENDILIFK YNGNSRFEVL MFDQASLCEK 120 TTSYFVKKCE HTESARGNKR GRSLEESFDE TNQSPDDVAD DHRAKKPRSD AAQTPPSRIQ 180 PSRSTSRSRR GIKRGKRGSR AAHPLQLKSR RREVTEEEKQ RAQQMAVAET SENSFIVVMR 240 ASHVYRGFFM SVPAEWARRH LPNKSHDIEL HANGNVWIAK YHYKGYGGGL TGGWKNFVME 300 NFLEESDVCL FDLISGTDDA IILDVKIFRV VEEVIPPSQV MRETSRGTSK RASKFVMDSV 360 SEEDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-17 | 209 | 334 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-17 | 209 | 334 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083780.1 | 0.0 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A2G9HEW8 | 1e-131 | A0A2G9HEW8_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13043 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-54 | B3 family protein |