PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 548aa MW: 57792.2 Da PI: 8.8309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011083713.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP | |||||||
2 | zf-C2H2 | 17 | 1.7e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k + +s+ k H++t+ XP_011083713.1 151 YKCERCSKKYAVQSDWKAHMKTC 173 9********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.86E-8 | 74 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 74 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0023 | 75 | 97 | No hit | No description |
SMART | SM00355 | 0.017 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.86E-8 | 146 | 172 | No hit | No description |
SMART | SM00355 | 43 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MQETMVEIEN SSPLSVSPAS GEAHILTVDN QIKADQSAET ILQPTKKKRS LPGMPDPDAE 60 VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSKD IRKRVYVCPE 120 PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARSQ PSVLPTSGGD MKVKLVEPPP PAASSPPPPP 240 LTPSTGVLSP VLSIRSSAAE LPENHSANFP PPPPGPAALT SSIATTITTT TPAIATATAT 300 VTTSSCSTSG SNVPGNGTVF AHTFSSSASG LGQSSQEPAS YSSILCAMAG SHQPAVDPMS 360 LSLSSPFHSP SPLFSATSQS PQPHYVSRPQ PALSATALLQ KAAQMGATSS NPSFLRGLGL 420 ALPSPSDPQE NTSTMASTSS TTPTHWSSSV KLENNSLASG LGLGLPSSGS SSLNELMMTP 480 STLFGNKPAT LDFLGLGMGA GEASPGGFSA FLSSIGGRLN MATTASFPGV RPAGETWNDS 540 PERKPSML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083713.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ042205 | 4e-56 | KJ042205.1 Sesamum indicum clone TilSSR_13406 microsatellite Sesame_13406 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083713.1 | 0.0 | protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-139 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2Z7AM57 | 0.0 | A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like | ||||
STRING | XP_009805007.1 | 1e-180 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-113 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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