PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 25630.8 Da PI: 8.2749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.4 | 9.9e-39 | 16 | 140 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptd+e+v +yL++k+ +++l+ i+e+d+ +++Pw+Lp +++++ yfFs+++ +++ +g+r +r t sg Wkatg++k++++ XP_011083447.1 16 LPPGFRFQPTDQEIVFQYLARKTFSHPLPP-LLIPEIDVSTFDPWELP---GNSDQDKYFFSNKEGNTRrNGDRISRGTCSGHWKATGSTKRIIC 106 79*************************988.67***************...446789999999987665379*********************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyr 127 + vg++k+Lvfykg++p + +tdW+mhey XP_011083447.1 107 PkRMPIVGIRKSLVFYKGKNPLACRTDWIMHEYF 140 8455569**************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-45 | 14 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.621 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-21 | 17 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEKYCLNVAG DGGSKLPPGF RFQPTDQEIV FQYLARKTFS HPLPPLLIPE IDVSTFDPWE 60 LPGNSDQDKY FFSNKEGNTR RNGDRISRGT CSGHWKATGS TKRIICPKRM PIVGIRKSLV 120 FYKGKNPLAC RTDWIMHEYF IALSGHMDCD MQQKKNSQGS LVRIGNWSLC RVFLKKRISS 180 TAEEVEENYD GYNPRKYDHF ITGADDDVTS DTDSCSASSS SSSSPPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-34 | 16 | 176 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083447.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ066165 | 5e-35 | KJ066165.1 Sesamum indicum clone TilSSR_37366 microsatellite Sesame_37366 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083447.1 | 1e-172 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 6e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2G9GSQ5 | 4e-76 | A0A2G9GSQ5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D01296.1.p | 5e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-53 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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