PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082962.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 447aa    MW: 51028.7 Da    PI: 4.9411
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34211112101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+ ++ ++sws++g+sfvv+++ efa ++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+++ll++
  XP_011082962.1  21 FLLKTYEMVDDPLTNPIVSWSHTGHSFVVWNPPEFAGELLPKYFKHNNFSSFIRQLNTYGFRKVDPDQ---------WEFANEEFIRGERHLLKN 106
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_011082962.1 107 IHRRK 111
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-3516110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-6017110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MIMGSSMMDG SNGSSNSPAP FLLKTYEMVD DPLTNPIVSW SHTGHSFVVW NPPEFAGELL  60
PKYFKHNNFS SFIRQLNTYG FRKVDPDQWE FANEEFIRGE RHLLKNIHRR KPIHSHSGQG  120
NAVPLTDSER EEFEKEIEKL KQEKLSLHSE VERHKEENRG YEHQLGSLAQ VLRVIDQRQQ  180
QLVVTLAQLL QKPGYASSVD EKMEPQNKKR RFSALQYLYD EANLDENLKN TFQENLSPSS  240
LPLLNLEVIE KLDSSLTFWE KFVHGVNQIS TEDSHDFDLP LLPPEVANTE TPLSSGDSDK  300
NVPFCTTECH TSAPTPQDCY SSHKLAASSA YIDSPAVSSI CIDPDSRHKS SGVDVNMSPT  360
KDLDIELAKE QEQYSSIPSV QPTVNDVFWQ QFLTESPASS TTREVQLERR DLDDWKDHSG  420
YADERVPWWN VDKLTQQIGH LARVERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251011019129Heat shock factor protein 1
5d5v_B1e-251011019129Heat shock factor protein 1
5d5v_D1e-251011019129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082962.10.0heat stress transcription factor A-4b-like
TrEMBLA0A2G9GL760.0A0A2G9GL76_9LAMI; Heat shock transcription factor
STRINGMigut.H02116.1.p1e-156(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-72heat shock transcription factor A4A