PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 34020.4 Da PI: 6.1741 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.5e-10 | 169 | 213 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L XP_011082599.1 169 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 213 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-15 | 162 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-15 | 166 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-7 | 169 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MRLWIYSSES INDPQFRNHS MANNPGETPS DDFLEQILGF PSYAAGAEAN LVGNEVPSAA 60 MMLQLGSGDG SGHLGGVGLG VGIGGAYGVG SGGGGFPLAL SLEQGKGGFN DASGSGKRFH 120 RDDVVDSRAS SIKMGFHGQP MANTVPAVPH PPAVRPRVRA RRGQATDPHS IAERLRRERI 180 AERIRALQEL VPSVNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPI 240 SSIEEEGSDS GRAQPAWEKW SNDGTERQVA KLMEENVGAA MQFLQSKALC IMPISLASAI 300 YHTQPPETTT TVKPESDPPP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082599.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082599.1 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 1e-121 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A022S2E7 | 1e-171 | A0A022S2E7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00370.1.p | 1e-172 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5799 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 2e-91 | bHLH family protein |
Publications ? help Back to Top | |||
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