PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082429.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 750aa    MW: 85609.3 Da    PI: 6.8504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.8e-2059152190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  XP_011082429.1  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPTADGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNVHNHELL 152
                     6***************999887455667********************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1759152IPR004330FAR1 DNA binding domain
PfamPF105517.4E-22274366IPR018289MULE transposase domain
PROSITE profilePS509669.458554587IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-7558584IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-5562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MPEQTNIVKE TSENGSESSP DDNGTIEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTADGKL QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNVHNHE LLKSNEVQLL PAYCTMTADD KSRICMYAKA  180
GMSVRQMLRL MELEKGIKLG CLPFSEIDVR NLLQSFRNVD RDNDPIDLLK MCKEKKDTDP  240
NFKYNYKLDS NNRIEHIAWS YASSIRLYEA FGDVVVFDTT HRLDAYDMLL GIWIGVDNHG  300
TYCFFGCLLL RDENVQSFSW GLKTFLAFMN GKAPGTILTD QNTWLKEAIS TEMPGTKHAF  360
SIWHIISKFS DWFSVILGPQ YDNWKAEFHR LYNLHTVEEF EVGWREMVDI YGLHGNKHIV  420
SLYALRTYWA LPFLRSYFFA GMTSTFQSEL INSYIQRFLS AQSELDNFVE QVASVLDARD  480
QAGAKLKMLH KVPRASLKTG SPIESHAATV LTPYAFCKLQ EELVLAPQYA TMLVDESYFI  540
VRHHTEVDGG CKVLWVPQDE FITCSCRHFE FSGILCRHVF RVLSTNNCFH IPDQYIPLRW  600
RDSLFTKSAR TSSGKVQLLQ SMISSLITES IETEDRLDVA CDHIALVLAR IKEFPGTADG  660
SNDIAYNSPS GSLILPDVED SHSIAQSFSG NAHECLAFAK LKDRRSRDEL DMYRKRRRCS  720
VPCCGQFGHE ANNCPMVRDD DLNGDGLGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713717RKRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082429.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082429.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_011082430.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_020550427.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A4D9AB630.0A0A4D9AB63_SALSN; Uncharacterized protein
STRINGVIT_07s0005g01120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]