PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22406 Da PI: 6.5054 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.4e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F++ L H+++H XP_011082367.1 67 YTCTFCRKEFRSAQALGGHMNVH 89 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.19E-7 | 64 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 65 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.323 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.3E-6 | 67 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0038 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAAAGRPLEL ISLTTHHTTS AHQTARIMWN NKQQISDDHD DDSWEVRAFE EDTAGSLTGI 60 TWPPRSYTCT FCRKEFRSAQ ALGGHMNVHR QDRARLRGAP PLAPNKATTS SVLIPTQQLG 120 LCLLYSLPNP NGVLIPAPTN VAMDFPLIET DSALSSHCQS SNTEPSASTS NDNNYHIRGR 180 NIEMGVKDST IEELDLELRL GRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-13 | 62 | 89 | 2 | 29 | superman protein |
2l1o_A | 1e-13 | 62 | 89 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082367.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082367.1 | 1e-151 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A068UXM0 | 3e-59 | A0A068UXM0_COFCA; Uncharacterized protein | ||||
STRING | EOY24017 | 4e-52 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-35 | C2H2 family protein |