PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082272.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 270aa    MW: 31783.5 Da    PI: 8.3165
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.63.9e-2454135186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++qe+++Lie+r ++e  + ++k++k+lWe v+++mre+g++r+  qCk+kw+nl  ryk   +++ ++     ++cp+fd+l+
  XP_011082272.1  54 QWSNQETRDLIEIRAQIEWGFTTTKRNKNLWEMVANRMREKGYRRTIDQCKCKWKNLVSRYKGQDASDPDN----GRQCPFFDELH 135
                     7***************************************************************9999984....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.01447111IPR017877Myb-like domain
CDDcd122032.27E-2253116No hitNo description
PfamPF138372.6E-2354137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYNNPENFSD TRRNPIIPYP LHHPIMIPIP LPPFSAAGGG DDDEFPRRDE RFPQWSNQET  60
RDLIEIRAQI EWGFTTTKRN KNLWEMVANR MREKGYRRTI DQCKCKWKNL VSRYKGQDAS  120
DPDNGRQCPF FDELHALFTT RENKMQHAQP NLETGSLKGR KRLKNISGDR SHEEYSQERD  180
DEEETGIDQA ETGTVAPKRK AGGEKKRKTG QLEKQLNNND SILASIQEML QSFIEQQERI  240
DMQWKESMEK CAQERENGAK KWRNLRERGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-1350125277DNA binding protein GT-1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082272.10.0trihelix transcription factor GT-3b-like
TrEMBLA0A2G9H9F72e-93A0A2G9H9F7_9LAMI; Transcription factor GT-2
STRINGMigut.E01394.1.p3e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-28Trihelix family protein