PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082100.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bZIP
Protein Properties Length: 227aa    MW: 25129.7 Da    PI: 6.3595
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.63.7e-1577130457
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      kr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +e  +L k++   +++ +
  XP_011082100.1  77 MKRIKRMVSNRESARRSRRRKQAHLADLEQQVEQLRGEHASLFKQVADATQQFK 130
                     79**************************************99987766666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-1874138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9976139IPR004827Basic-leucine zipper domain
PfamPF001705.4E-1377126IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-1378130No hitNo description
SuperFamilySSF579593.62E-1278128No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSFLSPNLYP NQSKVIDSQS AIRACYAVDG QMSTKNQTGW DNQAVGASSG SSHEQSDEEG  60
QETEAGSCDQ STNPVDMKRI KRMVSNRESA RRSRRRKQAH LADLEQQVEQ LRGEHASLFK  120
QVADATQQFK DATTNNRVLK SDVEALRAKV KLAEDMVARG SMTSSLSHLL QNYLNTPQDY  180
MNYNVNRIDN VAPLVSARGD DNSPYTGMSA ASPVPDMWTS DQSHIAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097RRSRRRKQ
29297SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082101.21e-152basic leucine zipper 9
SwissprotQ6ETX05e-57RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
SwissprotQ6H5003e-57RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2G9HEL54e-84A0A2G9HEL5_9LAMI; Uncharacterized protein
STRINGMigut.E01416.1.p5e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-47basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]