PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081778.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 359aa    MW: 39965.5 Da    PI: 6.7386
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245279135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011081778.1 245 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 279
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.6E-7918336IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.374239275IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-18239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14240276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-15240303No hitNo description
CDDcd002029.44E-15244291No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15245279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
METPEFFETN YYHAQHTPER RLPDPKTGDH FIIDDLLDLP NDETMVAADG CLDAAMAGTS  60
TESSSATPVD TSCNSSFSTA EPHFLAADIV GHRSLADGHF SSELCVPYDD LAELEWLSNF  120
VEESFSSDDM QKMQLIQGVK ARTNEDSESH HYQFQPEASR PGPILRSEMS VPAKARSKRS  180
RAAPGNWTSR LLVVSPTPAA PDVPAMSSSS ESDVATTAGK KSTKPAGQKK KEVPDSSTGG  240
EGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH  300
RKVLELRRQK EMLRTQQQQQ QFLHHHHHHH HHQSMMFDVS NSDDYLIHQH IGPDFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0462793e-59KJ046279.1 Sesamum indicum clone TilSSR_17480 microsatellite Sesame_17480 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081778.10.0GATA transcription factor 12-like
SwissprotP697812e-89GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2Z7BRK21e-163A0A2Z7BRK2_9LAMI; GATA transcription factor
STRINGXP_010249552.11e-158(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-82GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]