PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 881aa MW: 100179 Da PI: 6.3981 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.2 | 3.5e-15 | 66 | 139 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+ +GF +r+ + ++sk g+ t+r+f Cs g +++ ++ C+a+lk++++ ++kw vtkl +eH+H++ XP_011080507.1 66 FYEDYARGLGFGIRIGHFNRSKPAGKATSREFLCSGDGLKKRPGER--------------CRAMLKIELRGENKWIVTKLGKEHTHPV 139 9**************************************9998877..............**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-11 | 66 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-25 | 277 | 369 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 4.2E-11 | 554 | 588 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.127 | 554 | 590 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-8 | 565 | 592 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MDVELIDLEE GNMGLCGGIT DDGDDDSNDG GEMNAYGHSL AQDEERIVHE PHVGMEFDSE 60 DSAKMFYEDY ARGLGFGIRI GHFNRSKPAG KATSREFLCS GDGLKKRPGE RCRAMLKIEL 120 RGENKWIVTK LGKEHTHPVL SHGEVHYLNP RRHFTAKMNS VVESHQGVNI VPTGVMYASM 180 DGNHVPPEMN HVGKSMSLPE SNHTFKNTGS LSYMTRHPRR RTLARDAQDL LDYFKKMQAE 240 NPGFYYAIQL DEENRMANAF WADARSRAAY SHFGDAVIMD TIYRRNEYTV PFAPFTGVNH 300 HGQKIMFGCA LLLDESEATY VWLFQTFLTA MNDRPPVSLT TDKDRAIQVA VSKVFPEARH 360 CINKWHMLRE GQERMAQVCL AHPNFQVDLY NCINMTQTVE EFESFWASLL EKYDLKRNDW 420 LQSIYDARRQ WVPAYFRDSF FAIFPCLGFE SSFFDGYVNQ QTTLPLFFRE YERALENSFE 480 REIEADSDTI CTTPVLRTPS PMEKQTANLY TKRMFSKFQE ELVETFVYTA NRIDGDVASS 540 IYRVAKFEDD NKAYIVSVNN AEMKANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPWHYIL 600 KRWTINAKSV IASEEHSEPQ SHESLITRYN NLCKEAMKLA EEGAIASETY SVVLASLREG 660 GKKVSDIKRS IAKVPPSSSQ VSGVGYDDIR TSTATPEMTP LLWPRQDEIL RRFNLNDASV 720 TSHPISDLNA PTMAPVSVNH DDGHSDRTVV LPCLKSMTWV MENKNSTTAS RLAVINLKLQ 780 DYSRTHVGES EVKFSLSRLT LEPMLRSMAY ISEQLSTPAN KVAVINLKLQ DSETTSGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSNAINT KQDNTAKRQR K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080507.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080506.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_020550366.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2G9GF54 | 0.0 | A0A2G9GF54_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02416.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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