PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011080506.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 881aa MW: 100179 Da PI: 6.3981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011080506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.2	3.5e-15	66	139	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+ +GF +r+ + ++sk g+ t+r+f Cs g +++ ++ C+a+lk++++ ++kw vtkl +eH+H++ XP_011080506.1 66 FYEDYARGLGFGIRIGHFNRSKPAGKATSREFLCSGDGLKKRPGER--------------CRAMLKIELRGENKWIVTKLGKEHTHPV 139 9************************************9998877..............************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-11	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-25	277	369	IPR018289	MULE transposase domain
Pfam	PF04434	4.2E-11	554	588	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.127	554	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVELIDLEE GNMGLCGGIT DDGDDDSNDG GEMNAYGHSL AQDEERIVHE PHVGMEFDSE 60 DSAKMFYEDY ARGLGFGIRI GHFNRSKPAG KATSREFLCS GDGLKKRPGE RCRAMLKIEL 120 RGENKWIVTK LGKEHTHPVL SHGEVHYLNP RRHFTAKMNS VVESHQGVNI VPTGVMYASM 180 DGNHVPPEMN HVGKSMSLPE SNHTFKNTGS LSYMTRHPRR RTLARDAQDL LDYFKKMQAE 240 NPGFYYAIQL DEENRMANAF WADARSRAAY SHFGDAVIMD TIYRRNEYTV PFAPFTGVNH 300 HGQKIMFGCA LLLDESEATY VWLFQTFLTA MNDRPPVSLT TDKDRAIQVA VSKVFPEARH 360 CINKWHMLRE GQERMAQVCL AHPNFQVDLY NCINMTQTVE EFESFWASLL EKYDLKRNDW 420 LQSIYDARRQ WVPAYFRDSF FAIFPCLGFE SSFFDGYVNQ QTTLPLFFRE YERALENSFE 480 REIEADSDTI CTTPVLRTPS PMEKQTANLY TKRMFSKFQE ELVETFVYTA NRIDGDVASS 540 IYRVAKFEDD NKAYIVSVNN AEMKANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPWHYIL 600 KRWTINAKSV IASEEHSEPQ SHESLITRYN NLCKEAMKLA EEGAIASETY SVVLASLREG 660 GKKVSDIKRS IAKVPPSSSQ VSGVGYDDIR TSTATPEMTP LLWPRQDEIL RRFNLNDASV 720 TSHPISDLNA PTMAPVSVNH DDGHSDRTVV LPCLKSMTWV MENKNSTTAS RLAVINLKLQ 780 DYSRTHVGES EVKFSLSRLT LEPMLRSMAY ISEQLSTPAN KVAVINLKLQ DSETTSGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSNAINT KQDNTAKRQR K

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVELIDLEE GNMGLCGGIT DDGDDDSNDG GEMNAYGHSL AQDEERIVHE PHVGMEFDSE  60
DSAKMFYEDY ARGLGFGIRI GHFNRSKPAG KATSREFLCS GDGLKKRPGE RCRAMLKIEL  120
RGENKWIVTK LGKEHTHPVL SHGEVHYLNP RRHFTAKMNS VVESHQGVNI VPTGVMYASM  180
DGNHVPPEMN HVGKSMSLPE SNHTFKNTGS LSYMTRHPRR RTLARDAQDL LDYFKKMQAE  240
NPGFYYAIQL DEENRMANAF WADARSRAAY SHFGDAVIMD TIYRRNEYTV PFAPFTGVNH  300
HGQKIMFGCA LLLDESEATY VWLFQTFLTA MNDRPPVSLT TDKDRAIQVA VSKVFPEARH  360
CINKWHMLRE GQERMAQVCL AHPNFQVDLY NCINMTQTVE EFESFWASLL EKYDLKRNDW  420
LQSIYDARRQ WVPAYFRDSF FAIFPCLGFE SSFFDGYVNQ QTTLPLFFRE YERALENSFE  480
REIEADSDTI CTTPVLRTPS PMEKQTANLY TKRMFSKFQE ELVETFVYTA NRIDGDVASS  540
IYRVAKFEDD NKAYIVSVNN AEMKANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPWHYIL  600
KRWTINAKSV IASEEHSEPQ SHESLITRYN NLCKEAMKLA EEGAIASETY SVVLASLREG  660
GKKVSDIKRS IAKVPPSSSQ VSGVGYDDIR TSTATPEMTP LLWPRQDEIL RRFNLNDASV  720
TSHPISDLNA PTMAPVSVNH DDGHSDRTVV LPCLKSMTWV MENKNSTTAS RLAVINLKLQ  780
DYSRTHVGES EVKFSLSRLT LEPMLRSMAY ISEQLSTPAN KVAVINLKLQ DSETTSGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSNAINT KQDNTAKRQR K

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011080506.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080506.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020550366.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G9GF54	0.0	A0A2G9GF54_9LAMI; Uncharacterized protein
STRING	Migut.N02416.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]