PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080343.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 342aa    MW: 38007 Da    PI: 8.6953
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.3e-32192248158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+Rg+gGrF
  XP_011080343.1 192 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARGTGGRF 248
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-35190251IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.117191251IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-27193248IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-24194216IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860196216IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-24225248IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEDPFTTEFN ICHLCYYWWL VHNYRSMQSK SKSVHQGEAA GLYNVANSTS DPWWNNTGYN  60
SFSPAMMRGN ASDSSSLEQS VDGQSQSEGG INEEDDDTTK KSPTGTPLQP DRRYGREGPK  120
LQQVPPTLHP RNDGNFTHAP QLELVGHSVA CGSNPYDQYY GGMMAAYAQS LVPPYLHDMH  180
HARMPLPLEM AQEPVYVNAK QYHGILRRRQ SRAKAELEKK LIKVRKPYLH ESRHQHALRR  240
ARGTGGRFAK KSDSDTSKGT DSGSAIMSQS ISSSGSGPFL SDSSGAKVPD AQDLYNSDIG  300
NFRNQTNWQV QANQRRSAET GEGPTSSQKW GNIPPNRALA MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21192266276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080345.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_011080346.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_011080347.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_011080348.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_011080349.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_011080350.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_020550734.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_020550735.10.0nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV52e-54NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA5PGU31e-151A5PGU3_ANTMA; YA4
STRINGMigut.N02320.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.36e-53nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]