PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 324aa MW: 36267.9 Da PI: 8.0975 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.5e-09 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C f + GtC+ G+ C+FaHg XP_011078937.1 92 YKTRICAKFTE-GTCRNGEHCTFAHG 116 9**********.*************8 PP | |||||||
2 | zf-CCCH | 25.3 | 2.6e-08 | 153 | 175 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ ++ + C+yGd+C+F H XP_011078937.1 153 MKICKKYYNGEDCPYGDKCNFLH 175 579******66************ PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 219 | 244 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + G+C++G+rC+FaHg+ XP_011078937.1 219 WKTKLCSKWEM-GQCPFGERCHFAHGQ 244 8**********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-15 | 88 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-8 | 89 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.15 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 153 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-8 | 153 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-8 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-13 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 219 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MSYPDSTPPP QSFLSPPFAG GDGGGYWPPF LMGNDHQQQQ QPDLISQFDR PPPFKRPRTN 60 EKPQNFSPFP QMNPRINPPN IPGNKGTSHI FYKTRICAKF TEGTCRNGEH CTFAHGAEDL 120 REPPPNWQEL IREKERGAGS GSWGDDQRMI HRMKICKKYY NGEDCPYGDK CNFLHERGPP 180 PLKKFKVDMP GQRESSAISI GVTGDARGSS TDFDQTAYWK TKLCSKWEMG QCPFGERCHF 240 AHGQSGTLDE AELVMNAVPV PRKAASVSAF STPPANPMVA PPLNVDGEQK KTSKWKLTKK 300 INRIYADWLD DLTPPNCSPG VEEI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078937.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078937.1 | 0.0 | zinc finger CCCH domain-containing protein 39 isoform X2 | ||||
Swissprot | Q9LT81 | 4e-71 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A2G9GJN5 | 1e-158 | A0A2G9GJN5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00116.1.p | 1e-126 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-63 | C3H family protein |