PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078886.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 705aa MW: 77349.9 Da PI: 6.2064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.5e-08 | 282 | 302 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_011078886.1 282 PCPDFRK-GACRRGDLCEYAHG 302 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.8E-18 | 17 | 140 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.4E-11 | 55 | 128 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.1E-18 | 58 | 140 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.059 | 59 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.029 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.71E-15 | 61 | 137 | No hit | No description |
PROSITE profile | PS50088 | 13.865 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.4E-6 | 94 | 126 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.5E-6 | 95 | 110 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.5E-6 | 113 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.2E-5 | 277 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 281 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 282 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 282 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 310 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 34 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MNVNLSNVEN RDAFASLLEL AANNDLEGFQ KYVDREPLSV DVIGLWYGRQ KGSNQMVLQH 60 RTPLMVAATY GSIDVLKHII SLPEVDVNRS CGSDGNTALH CAASGGSLNA VDVVKLLLAA 120 GADPNLTDVN GCRPVDVIIV SPKFQGMKYS LEMMLKMDAS FQEEQNSGVS IGTSNANSPP 180 LSPSPRNGSP GSPSESGPSP NLTRLSDVPV SPAPEKKEYP IDPSLPDIKN SIYSTDEFRM 240 FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDLCEYA 300 HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHAQEELRP LYVSTGSAVP SPRSSTSAVN 360 AMDFAAAMNP LPGSPSTVPM MSPSPFTPPI SPSNNSISNM GWPPQQNVPP LHLPGSNLQS 420 SRLRSSLNAR DIPPDDLSLF AEIDVQQQQL LNELSYPSIS TNMLSRSARP KTLTPSNLED 480 IFCAESSSPR YSDQALSSAV FSPQHKSAVL NQFQQQQQTM LSPIKTTFSP RNVDHSLMQG 540 PFGLPSPGRM SPRGLEPISP MSARMSMIGQ REKQHQQCQS LSSRGLGSTA ASAVASLEET 600 WSKWENPNET PDWAINTDDF GKLKRASSFD LLNNVEEPDL SWVQSLFKES PQDMKEKYAS 660 RISGTAGAST SSGEGEKSDF LFDQVDQSVL GAWLERLQLD QMMAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078886.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078886.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_020549443.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2G9HGR0 | 0.0 | A0A2G9HGR0_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | XP_002526718.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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