PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078720.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 883aa MW: 100200 Da PI: 6.4017

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.1	1.9e-15	66	139	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++YA++vGFs+ + + ++k +g i++ +f Cs+e +++++ ++ C+a+l++ +++ + w+vtk++++HnH+ XP_011078720.1 66 LYDAYARRVGFSTHVGQYIRTKPDGPIVSWEFACSREVFKRKNVES--------------CNAMLRIDRKDPDIWVVTKFVEDHNHST 139 7*************************************999877..............************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-12	66	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-30	299	391	IPR018289	MULE transposase domain
Pfam	PF04434	3.5E-10	576	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.177	576	612	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MDAEVIEVDM GRRQRNRASY THCSEDGEEN LTENSSVGGM SNEVDDRSEK PYVGMEFESE 60 EAAKNLYDAY ARRVGFSTHV GQYIRTKPDG PIVSWEFACS REVFKRKNVE SCNAMLRIDR 120 KDPDIWVVTK FVEDHNHSTV SPSKVHYLRP RRHFAGTTKS VPETADNQND IMVSVDGNHV 180 FYDPIPVVGD TSPIEINRTV RNASPAEKIP VVRNLSSFET NRATTNTIPL MPVQFIQPSS 240 RRRTLGRDAQ NLLTYFRKMQ AENPGFYYAI QLDDENRLSN VFWADARSRI AYSHFGDAVV 300 FDTMYRPNQF QVPFAPFTGV NNHGQMVLFG CALLLDESEA SFAWVFKTWL SAMNDQPPVS 360 ITTDQDRAIK AAVHQVFPET RHCICKWHIL REGQERLSHI YLAHPSFYGE LYSCINFSET 420 IEDFESSWSS VLDKYDLWKN EWLQAVYNAR KQWAPVYFRD TFFAALSSNH GVSSFFDGYV 480 NQQTTIPMFF KQYERALENS LENEIEADYD TMCTTPVLKT PSPMEQQAAN LYTRKVFAKF 540 QEELVETFVY TANKIDGDGT VSKFRVAKYE HDHKAYIVML DVSGMNASCS CQMFEYSGVL 600 CRHILTVFTV TNVLTIPSHY ILKRWTRNAR ASLSDEQEID MQCMESLTVR FNNLCREALK 660 FAEVGAVAAE TYNAAMDVLQ EGARKISMVK KNVTKIKSPS SQGSGSFQDN GSKKASVSIP 720 DTVPSLWPWQ DAAQNRFNIN DAGPPVADLN HPTMAPIAIN RDGSLADNSV VLTCFKSMTW 780 VIENKNSASK VAVINLKLHD YGKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSTPANR 840 VAVINLKLQD TKTTSGEAEV KFQVSRDTLA SMLRSMAYIR EQL

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MDAEVIEVDM GRRQRNRASY THCSEDGEEN LTENSSVGGM SNEVDDRSEK PYVGMEFESE  60
EAAKNLYDAY ARRVGFSTHV GQYIRTKPDG PIVSWEFACS REVFKRKNVE SCNAMLRIDR  120
KDPDIWVVTK FVEDHNHSTV SPSKVHYLRP RRHFAGTTKS VPETADNQND IMVSVDGNHV  180
FYDPIPVVGD TSPIEINRTV RNASPAEKIP VVRNLSSFET NRATTNTIPL MPVQFIQPSS  240
RRRTLGRDAQ NLLTYFRKMQ AENPGFYYAI QLDDENRLSN VFWADARSRI AYSHFGDAVV  300
FDTMYRPNQF QVPFAPFTGV NNHGQMVLFG CALLLDESEA SFAWVFKTWL SAMNDQPPVS  360
ITTDQDRAIK AAVHQVFPET RHCICKWHIL REGQERLSHI YLAHPSFYGE LYSCINFSET  420
IEDFESSWSS VLDKYDLWKN EWLQAVYNAR KQWAPVYFRD TFFAALSSNH GVSSFFDGYV  480
NQQTTIPMFF KQYERALENS LENEIEADYD TMCTTPVLKT PSPMEQQAAN LYTRKVFAKF  540
QEELVETFVY TANKIDGDGT VSKFRVAKYE HDHKAYIVML DVSGMNASCS CQMFEYSGVL  600
CRHILTVFTV TNVLTIPSHY ILKRWTRNAR ASLSDEQEID MQCMESLTVR FNNLCREALK  660
FAEVGAVAAE TYNAAMDVLQ EGARKISMVK KNVTKIKSPS SQGSGSFQDN GSKKASVSIP  720
DTVPSLWPWQ DAAQNRFNIN DAGPPVADLN HPTMAPIAIN RDGSLADNSV VLTCFKSMTW  780
VIENKNSASK VAVINLKLHD YGKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSTPANR  840
VAVINLKLQD TKTTSGEAEV KFQVSRDTLA SMLRSMAYIR EQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078720.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078717.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078718.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078719.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078720.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078721.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078722.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549440.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549441.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G9HDS2	0.0	A0A2G9HDS2_9LAMI; Uncharacterized protein
STRING	VIT_13s0047g00330.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]