PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 883aa MW: 100200 Da PI: 6.4017 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.1 | 1.9e-15 | 66 | 139 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++YA++vGFs+ + + ++k +g i++ +f Cs+e +++++ ++ C+a+l++ +++ + w+vtk++++HnH+ XP_011078717.1 66 LYDAYARRVGFSTHVGQYIRTKPDGPIVSWEFACSREVFKRKNVES--------------CNAMLRIDRKDPDIWVVTKFVEDHNHST 139 7***************************************999877..............**************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-12 | 66 | 139 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.2E-30 | 299 | 391 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.5E-10 | 576 | 610 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.177 | 576 | 612 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.5E-7 | 587 | 614 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MDAEVIEVDM GRRQRNRASY THCSEDGEEN LTENSSVGGM SNEVDDRSEK PYVGMEFESE 60 EAAKNLYDAY ARRVGFSTHV GQYIRTKPDG PIVSWEFACS REVFKRKNVE SCNAMLRIDR 120 KDPDIWVVTK FVEDHNHSTV SPSKVHYLRP RRHFAGTTKS VPETADNQND IMVSVDGNHV 180 FYDPIPVVGD TSPIEINRTV RNASPAEKIP VVRNLSSFET NRATTNTIPL MPVQFIQPSS 240 RRRTLGRDAQ NLLTYFRKMQ AENPGFYYAI QLDDENRLSN VFWADARSRI AYSHFGDAVV 300 FDTMYRPNQF QVPFAPFTGV NNHGQMVLFG CALLLDESEA SFAWVFKTWL SAMNDQPPVS 360 ITTDQDRAIK AAVHQVFPET RHCICKWHIL REGQERLSHI YLAHPSFYGE LYSCINFSET 420 IEDFESSWSS VLDKYDLWKN EWLQAVYNAR KQWAPVYFRD TFFAALSSNH GVSSFFDGYV 480 NQQTTIPMFF KQYERALENS LENEIEADYD TMCTTPVLKT PSPMEQQAAN LYTRKVFAKF 540 QEELVETFVY TANKIDGDGT VSKFRVAKYE HDHKAYIVML DVSGMNASCS CQMFEYSGVL 600 CRHILTVFTV TNVLTIPSHY ILKRWTRNAR ASLSDEQEID MQCMESLTVR FNNLCREALK 660 FAEVGAVAAE TYNAAMDVLQ EGARKISMVK KNVTKIKSPS SQGSGSFQDN GSKKASVSIP 720 DTVPSLWPWQ DAAQNRFNIN DAGPPVADLN HPTMAPIAIN RDGSLADNSV VLTCFKSMTW 780 VIENKNSASK VAVINLKLHD YGKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSTPANR 840 VAVINLKLQD TKTTSGEAEV KFQVSRDTLA SMLRSMAYIR EQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078717.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078717.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_011078718.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_011078719.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_011078720.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_011078721.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_011078722.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020549440.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020549441.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2G9HDS2 | 0.0 | A0A2G9HDS2_9LAMI; Uncharacterized protein | ||||
STRING | VIT_13s0047g00330.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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