PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078221.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 353aa    MW: 39826.7 Da    PI: 6.8341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-08139159526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C+ Gd+C FaHg
  XP_011078221.1 139 ACPDFRK-GNCRKGDSCEFAHG 159
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.04291123IPR000571Zinc finger, CCCH-type
PfamPF146083.4115121No hitNo description
SMARTSM003564.0E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5139161IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6139159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001166196IPR000571Zinc finger, CCCH-type
SMARTSM003568.6169192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.432169193IPR000571Zinc finger, CCCH-type
PfamPF146080.012174190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMLGERSYGG TAVHVPPWSP TAEDPGSYPF SPTAGNVNSS ADDYYLYFQN DSLKALQRFL  60
PSNSNDAVAE FQVPDSDNGG TGDFLPVDAH SCDHFRMFEF KVRKCTRGRS HDWTECPFAH  120
PGEKARRRDP RKFHYSGTAC PDFRKGNCRK GDSCEFAHGV FECWLHPARY RTQPCKDGMN  180
CKRRVCFFAH SPDQLRVLSP RAETFDGSPR RLAFMSPPEP VSPPSESPPM SPMTPTSVNE  240
MVASMRQLHL NKVKSMPSTW LGSSSSPRLK MTPPGYFSLP TTPTRTITRP GISYFETWDS  300
PQQEEEEPME MVESGRDLRA KMFEKLSKEN PLERVDPEPN PNPDVGWISD LVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078221.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-114C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G9H9E70.0A0A2G9H9E7_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.K00565.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-104C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]