PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 471aa MW: 52683 Da PI: 6.5129 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 140 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011077383.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.1 | 2.1e-13 | 232 | 282 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_011077383.1 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 282 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-9 | 140 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-16 | 140 | 198 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.91E-11 | 141 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 141 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-31 | 141 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 141 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-9 | 232 | 282 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 232 | 291 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.92E-25 | 232 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 233 | 290 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-32 | 233 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.514 | 233 | 290 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 234 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 272 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MLNLNLTIDP SIPIANRAEM ASDEHLILSG DQMEYSGSSN SSIVNVETSS TAGDENSCSN 60 NFVGFDIWKS NGEYEESEKS SCGYVTKEFF PASGEVRPTQ WLDLSEDRRE VAEEMIIAQQ 120 QQQKRQQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180 DRAAIKFRGL DADINFNSSD YEEDLKQMNN LTKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240 KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PSTYDEELSS 300 EPEIGAGENH DLDLNLGIAP PNRANVQTRD MEMGSFQIQS CSNNPPENTG TKDSASVTVG 360 AQLSHGHVSA SGRPFIWSGV DSSFHLAHKG TTIDKSVEVD PSTNWTWKSP EHFHGNHPLP 420 LFPIAASSGF ATSSFTSSSA AIHELPFNTR SQNHYPPPVA NSNNRSHYRW R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077383.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077383.1 | 0.0 | floral homeotic protein APETALA 2 | ||||
Swissprot | Q8H443 | 1e-107 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2G9GII3 | 0.0 | A0A2G9GII3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009606014.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-107 | related to AP2.7 |
Publications ? help Back to Top | |||
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