PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 407aa MW: 45187.3 Da PI: 8.5145 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.2e-11 | 32 | 56 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ rtG C++G++C+F+H+ XP_011077187.1 32 GEPDCSYYIRTGLCRFGATCRFNHP 56 6899********************9 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 78 | 102 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_011077187.1 78 QPECQYYLKTGTCKFGATCKFHHPR 102 799********************96 PP | |||||||
3 | zf-CCCH | 25.9 | 1.7e-08 | 126 | 148 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++ r+G Ck+G +CkF+H++ XP_011077187.1 126 NCAYYIRNGLCKFGRTCKFHHPQ 148 7********************97 PP | |||||||
4 | zf-CCCH | 36.9 | 6.3e-12 | 269 | 294 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tG Ck+G+ CkF+H++ XP_011077187.1 269 GQPQCQFYMKTGDCKFGAVCKFHHPR 294 7899********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.4e-12 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_011077187.1 314 PGEPLCVFYSRYGICKFGPSCKFDHPM 340 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-5 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-8 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-4 | 36 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 78 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-7 | 81 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.027 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 126 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-5 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 267 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 271 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 273 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 316 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 318 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGPWQKIYDA LLQMNMRPME QMESGPYPVR EGEPDCSYYI RTGLCRFGAT CRFNHPLNRT 60 LAIATARMKS EYPERIGQPE CQYYLKTGTC KFGATCKFHH PRDELGIAGR VALNVLGYPL 120 RPNEINCAYY IRNGLCKFGR TCKFHHPQPS NNMMVPLRDS ALHPPIQSPT TGQLSFHRAH 180 LLPNPQWQTP SSYAPLFMSQ GVASAPGWNT YSGQVEPVSP SENQQGNIQN DGTSYQVEGL 240 NVGSQFGSNT LPIGYYAFKR DNVFPERPGQ PQCQFYMKTG DCKFGAVCKF HHPRERLIPL 300 PDCVLSPIGL PLRPGEPLCV FYSRYGICKF GPSCKFDHPM RVFAHNAAAS ASTDGNAVRD 360 FIAPSPGTLA ISFSPDGLVG AGSTNNQRLS FSESRQKPSG DNNIVTE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077187.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A022RI83 | 0.0 | A0A022RI83_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01877.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-165 | zinc finger protein 1 |