PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 435aa MW: 47333.5 Da PI: 7.773 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.5e-09 | 112 | 132 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+++ + G Ck+Gd+CkF H XP_011076248.1 112 KLCNHWVQ-GSCKFGDSCKFLH 132 69******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.059 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.779 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-6 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-7 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 4.8E-46 | 133 | 427 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 4.6E-5 | 139 | 178 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.01E-45 | 141 | 428 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 1.4E-4 | 142 | 178 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.884 | 146 | 187 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 20.224 | 146 | 348 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 1.8E-6 | 165 | 179 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 165 | 179 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 21 | 218 | 255 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.037 | 262 | 299 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.058 | 266 | 299 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.21 | 269 | 308 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.8E-6 | 286 | 300 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.8E-5 | 302 | 339 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0016 | 304 | 338 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 8.971 | 309 | 338 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.8E-6 | 326 | 340 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2.1 | 343 | 386 | IPR001680 | WD40 repeat |
SMART | SM00320 | 1 | 389 | 426 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDVDGGRRMF QRLGSSSSSD SSSNNKQQKV CFHWRQGKCT RYPCPFLHSE LPTAVNGGKR 60 AHQGFGAEDN YRGGGGLRRS GNYNFSNSNT WGRVQSQQPG SSNRTAVKKI EKLCNHWVQG 120 SCKFGDSCKF LHQWSTGDCF TLLAPLEGHQ QVVTGIALPS GSDKLYTGSQ DETVRVWDCQ 180 SGQLAGLINL GGAMGCMLSE GPWVFVGLTN LVKAWNIQTS TELSLNGPVG QVYSLVVGGD 240 LLFAGTQEGT ILAWKFNVAA NCFEPAASLK GHSLAVVTLV VGGNRMYSGS MDHSIKVWSL 300 ETLQCIQTLS GHTDVVMSIL CWDHFLLSAS LDKTVKVWAA TETGNLEVTY THNEEHGILT 360 LCGMHDSEAK PVLFCSCNDH CIRVYDLPSF SERGKIFSKK EVRAIQIGPG GLFFTGDGSG 420 QVKVWKWSAE PTPIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-23 | 143 | 425 | 10 | 323 | Tako8 |
6g6n_A | 2e-23 | 143 | 425 | 10 | 323 | Tako8 |
6g6n_B | 2e-23 | 143 | 425 | 10 | 323 | Tako8 |
6g6n_C | 2e-23 | 143 | 425 | 10 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076248.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A2G9IAM3 | 0.0 | A0A2G9IAM3_9LAMI; Cdc4 and related F-box and WD-40 protein | ||||
STRING | Migut.F00387.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2884 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |