PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HSF | ||||||||
Protein Properties | Length: 346aa MW: 38055.2 Da PI: 5.491 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.8 | 1.3e-36 | 27 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll++ XP_011076202.1 27 FLTKTYQLVDDHAIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGEKKLLCD 112 9*****************************************************************99.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_011076202.1 113 IQRRK 117 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.2E-38 | 20 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-58 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.32E-35 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.9E-33 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-20 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-20 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAPPPVDRNG GGESTAGDTP RTLPTPFLTK TYQLVDDHAI DDVISWNEDG STFIVWNPTE 60 FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSNE CFRRGEKKLL CDIQRRKIVT 120 ASSTAVATPS AAVAVQPSPA APPRTVSPSD SGEEQVISSS NSPATVREFS GSTAELIGEN 180 ERLRKENVQL NKELSQMKSL CNNIYALMSN YASNNKNDGS NDHQGHSCKL YLAENAVKPL 240 DLLPMTRFCE EMQTAVVAAA AAANGGEESH IRSAAEEISA RLFGVPIGMK RGREGEGSSG 300 DHEMDLQLQQ PGGDIKSEPL DQENSGTDQE TSWLKRSNSR NRKVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-25 | 12 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 12 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 12 | 116 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076201.1 | 0.0 | heat stress transcription factor B-2a | ||||
Refseq | XP_011076202.1 | 0.0 | heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 8e-99 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A4D8YLM7 | 0.0 | A0A4D8YLM7_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | Migut.F00357.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-95 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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