PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076201.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 346aa    MW: 38055.2 Da    PI: 5.491
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36271172101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_011076201.1  27 FLTKTYQLVDDHAIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGEKKLLCD 112
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_011076201.1 113 IQRRK 117
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3820111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.32E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3327116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAPPPVDRNG GGESTAGDTP RTLPTPFLTK TYQLVDDHAI DDVISWNEDG STFIVWNPTE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSNE CFRRGEKKLL CDIQRRKIVT  120
ASSTAVATPS AAVAVQPSPA APPRTVSPSD SGEEQVISSS NSPATVREFS GSTAELIGEN  180
ERLRKENVQL NKELSQMKSL CNNIYALMSN YASNNKNDGS NDHQGHSCKL YLAENAVKPL  240
DLLPMTRFCE EMQTAVVAAA AAANGGEESH IRSAAEEISA RLFGVPIGMK RGREGEGSSG  300
DHEMDLQLQQ PGGDIKSEPL DQENSGTDQE TSWLKRSNSR NRKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251211617129Heat shock factor protein 1
5d5v_B2e-251211617129Heat shock factor protein 1
5d5v_D2e-251211617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.10.0heat stress transcription factor B-2a
RefseqXP_011076202.10.0heat stress transcription factor B-2a
SwissprotQ9SCW48e-99HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A4D8YLM70.0A0A4D8YLM7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-95heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]