PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 36828.3 Da PI: 7.3124 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 50.1 | 4.4e-16 | 246 | 271 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd+C+FaHg XP_011076178.1 246 FKTELCNKWQQTGTCPYGDNCQFAHG 271 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-20 | 240 | 278 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-12 | 242 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.244 | 245 | 273 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-10 | 245 | 272 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-13 | 246 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-11 | 279 | 312 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-7 | 282 | 313 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-4 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQREFSISGR EKPTVSAASP PYTGGYDFAA SLYPSIFPPM HSPLLDYLND GVSPSRESDD 60 VSTSCLPQIQ QQHLHQDLMD RHQRVLSNLR DVANQAQALR HENVNLKMAN LDLNNRLNML 120 LNAAPCHGVD LVPGFNSVVD GLRNMGFGTE EEGTSENEAV VKSPTSVMDP GRGDSGELDR 180 VHLPKSISIR SSGYLKAVRA GGSSRKGGDC GKASNQTRID NGTQRVYVNG GKKEQIELEV 240 YNQGMFKTEL CNKWQQTGTC PYGDNCQFAH GIEELRPVLR HPRYKTEICR MVLNGVPCPY 300 GHRCHFRHTL TDQEQLTRAM NSNALQPLDY R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-22 | 246 | 308 | 4 | 66 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076178.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076170.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Refseq | XP_011076178.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Refseq | XP_011076187.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q9C9F5 | 1e-68 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A2G9GDZ5 | 1e-173 | A0A2G9GDZ5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01008.1.p | 1e-162 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-64 | C3H family protein |