PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075979.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 309aa MW: 34125.6 Da PI: 5.8375

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.7	9.2e-17	166	220	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l e +++ + XP_011075979.1 166 DIKRIKRMVSNRESARRSRRRKQAHLADLEQQVEQLRGENASLFKQLAEATQQFK 220 58****************************************9977777666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-18	164	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.335	166	220	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.05E-12	167	219	No hit	No description
Pfam	PF00170	1.7E-14	167	219	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-13	168	219	No hit	No description
CDD	cd14702	5.65E-7	169	219	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDNKKNTVFK NSSIFGYSDM KRSPSELALE ELFASTEDDR KIHHKADIFG PSADAFHALF 60 SLDNATDDHM LSPFKNLEIR KGSSGPNSLA DNPFWSRNIY PIQSNTSAPI DSQSSICVDS 120 PISGNNSKVG DNQAVGASSG SSHEQTDEDD LEIEAGPCEQ STNPVDIKRI KRMVSNRESA 180 RRSRRRKQAH LADLEQQVEQ LRGENASLFK QLAEATQQFK DSTTNNRVLR SDVEALRAKV 240 KLAEDMVARG SLTSSLSHLL QNYLNTPHDY MNNNINRMDH NVSPIMAGRP DDNSSFTGLS 300 ASPVGLENA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	187	RRSRRRKQ
2	182	187	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075979.1	0.0	basic leucine zipper 9-like
Swissprot	Q6H500	3e-64	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	A0A022QNJ2	1e-139	A0A022QNJ2_ERYGU; Uncharacterized protein
STRING	Migut.E01416.1.p	1e-140	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8139	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	7e-52	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]