PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28985.2 Da PI: 9.7117 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.6 | 1.4e-15 | 8 | 93 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+++p + +g l lp f+++ ++ +s + + +++ W++++ ++++++ + + +GW +Fv+++gL +gDfvvF+++g+ f+ v XP_011075721.1 8 FFKIMMP---GFQGKLNLPPAFCKKVREE--RS-DWAIVTSRKGMWKMNV--CRNPEGlISFVNGWPDFVSDHGLSVGDFVVFEHTGDLHFNAV 93 7777755...4445588******999633..44.67777888889*****..99999989999*********************9987666433 PP | |||||||
2 | B3 | 58.5 | 1.2e-18 | 144 | 227 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 +++s++ ksg++++p +f ++++++ + ++l+d++ r+W +kl+++++++ +++GW +F +n+L+egD++vF+++++s XP_011075721.1 144 LTLKSSHQKSGQVTIPASFSRSNNLN--GFSSIILTDPNRREWPIKLSFQRTGQFrARMATGWVSFYASNKLQEGDVCVFEVNRSS 227 4558999999*************988..4447*****************888887799***********************77653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-19 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.391 | 5 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.53E-14 | 6 | 96 | No hit | No description |
SMART | SM01019 | 1.6E-14 | 8 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-13 | 8 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-19 | 137 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-21 | 137 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.46E-16 | 140 | 241 | No hit | No description |
SMART | SM01019 | 6.9E-13 | 141 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.071 | 141 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-16 | 142 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEGNPRCFFK IMMPGFQGKL NLPPAFCKKV REERSDWAIV TSRKGMWKMN VCRNPEGLIS 60 FVNGWPDFVS DHGLSVGDFV VFEHTGDLHF NAVVFDVSAC NKEFVVEFKK EDPGRQVHSK 120 YHSRNTKRKP DKESVISKKP YFVLTLKSSH QKSGQVTIPA SFSRSNNLNG FSSIILTDPN 180 RREWPIKLSF QRTGQFRARM ATGWVSFYAS NKLQEGDVCV FEVNRSSQCN KSIMMDVKIF 240 RDPLVHDIDS LDC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075721.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075721.1 | 0.0 | B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2G9H526 | 8e-88 | A0A2G9H526_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D01639.1.p | 2e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-22 | B3 family protein |