PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075519.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 291aa MW: 33568.7 Da PI: 8.8344

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.1e-53	13	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s XP_011075519.1 13 LPPGFRFHPTDEELIMHYLRNQATSRPCPV-SIIPEVDIYKFDPWELPAKAEFGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 105 79**************************.89***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk Lvfykgr pkg ktdW+m eyrl XP_011075519.1 106 GSKYVGIKKALVFYKGRPPKGIKTDWIMXEYRL 138 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-66	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	60.629	13	165	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTKNMVGRNS SALPPGFRFH PTDEELIMHY LRNQATSRPC PVSIIPEVDI YKFDPWELPA 60 KAEFGENEWY FFSPRDRKYP NGVRPNRAAV SGYWKATGTD KAIYSGSKYV GIKKALVFYK 120 GRPPKGIKTD WIMXEYRLSE SRSQPLKQNG SMRLDDWVLC RIYKKKNLGR TCDQQIRVDD 180 ENHSFSQLVP TTTYNSHANT EPQPYKFPRT CSLTHLWEFE YMGSISQLLS DNAQETSTPL 240 SNNGNFSLAG EKYYQLGQAQ QQLPCAEAMM MKFHQVNSNQ PVLENPVFEM Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-71	12	167	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-71	12	167	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-71	12	167	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-71	12	167	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-71	12	167	19	170	NAC domain-containing protein 19
3swm_B	2e-71	12	167	19	170	NAC domain-containing protein 19
3swm_C	2e-71	12	167	19	170	NAC domain-containing protein 19
3swm_D	2e-71	12	167	19	170	NAC domain-containing protein 19
3swp_A	2e-71	12	167	19	170	NAC domain-containing protein 19
3swp_B	2e-71	12	167	19	170	NAC domain-containing protein 19
3swp_C	2e-71	12	167	19	170	NAC domain-containing protein 19
3swp_D	2e-71	12	167	19	170	NAC domain-containing protein 19
4dul_A	2e-71	12	167	16	167	NAC domain-containing protein 19
4dul_B	2e-71	12	167	16	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075519.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075519.1	0.0	LOW QUALITY PROTEIN: NAC transcription factor 29
Swissprot	K4BWV2	1e-126	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A2G9FYW3	1e-136	A0A2G9FYW3_9LAMI; Uncharacterized protein
STRING	XP_009781251.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-110	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]