PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075335.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 227aa    MW: 26143.7 Da    PI: 8.0693
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-3491002102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++e+isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF+++ F+kg+++ l++
  XP_011075335.1   9 FLLKTYMLVEDPATDEVISWNGDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATTR---------WEFSNDMFHKGERDRLCE 94 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011075335.1  95 IHRRKA 100
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-35393IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.38E-32598IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-52598IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-18932IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-30998IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-184759IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404872IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRKAAPPPFL LKTYMLVEDP ATDEVISWNG DGTAFVVWQP AEFARDLLPT LFKHSNFSSF  60
VRQLNTYGFR KVATTRWEFS NDMFHKGERD RLCEIHRRKA WSHKPQPNVQ LQAAQKDSLD  120
NDDQKSSSTS SSSEFTILVD ENKRLKKENG VLNSELGIMK RKCKELLDLV AIYGVNSKKM  180
EEEEEENNEG PKLFGVRLEV EGEMLEKKRK RAEISESARL ILSQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-1979818120Heat shock factor protein 1
5hdg_A3e-197988110Heat shock factor protein 1
5hdn_A3e-197988110Heat shock factor protein 1
5hdn_B3e-197988110Heat shock factor protein 1
5hdn_C3e-197988110Heat shock factor protein 1
5hdn_D3e-197988110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0456932e-56KJ045693.1 Sesamum indicum clone TilSSR_16894 microsatellite Sesame_16894 sequence.
GenBankKJ0506572e-56KJ050657.1 Sesamum indicum clone TilSSR_21858 microsatellite Sesame_21858 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075334.11e-169heat stress transcription factor B-3 isoform X1
SwissprotO222301e-73HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2G9I4811e-109A0A2G9I481_9LAMI; Uncharacterized protein
STRINGXP_010105217.11e-108(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-71heat shock transcription factor B3