PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075237.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 289aa    MW: 32001.4 Da    PI: 8.5404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055228249323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     Cp+C+ +Fs+   L+ H  + H
  XP_011075237.1 228 CPHCKLRFSTVGALVDHVEKvH 249
                     *****************99888 PP
2zf-C2H216.22.9e-05261283223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F+++  L+ H  + H
  XP_011075237.1 261 ICPKCSKGFRDPVALVEHVEKdH 283
                     5*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.31E-11459No hitNo description
PROSITE profilePS510397.8891059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-91153IPR000058Zinc finger, AN1-type
PfamPF014285.3E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00421352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.1E-1190151IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.92E-993145No hitNo description
PROSITE profilePS510398.14998151IPR000058Zinc finger, AN1-type
PfamPF014281.0E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0059101142IPR000058Zinc finger, AN1-type
SMARTSM003550.091226249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228249IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725260288IPR007087Zinc finger, C2H2
SMARTSM003555.8260283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCRQ IDFLPFTCDC CRLVFCLEHR SYNRHRCPKA NKNDVTVVIC  60
PLCAKGVRLH PEEDPNITWE SHVNTECDPS NYEKATKKKK CPVPRCREML TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCPGP KKPEASFPFM GFRSKSVKDQ PKQAASTSSS NWTSGFLKLA  180
SSFRATAEAG ISRLSSEFNQ EPSTNRTIQS SRGSTSNRGS ASGQVEACPH CKLRFSTVGA  240
LVDHVEKVHE QNGVMKVTLD ICPKCSKGFR DPVALVEHVE KDHGGASKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075237.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075237.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-122SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2G9GNB81e-169A0A2G9GNB8_9LAMI; Putative Zn-finger protein
STRINGXP_009765392.11e-154(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]