PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 664aa MW: 72390.2 Da PI: 6.6104 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 270 | 290 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_011075220.1 270 PCPDFRK-GACRRGDMCEYAHG 290 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.04E-13 | 17 | 141 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-12 | 18 | 130 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF00023 | 2.4E-4 | 61 | 117 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.50E-9 | 61 | 126 | No hit | No description |
PROSITE profile | PS50297 | 10.206 | 91 | 155 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00356 | 4.0E-6 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 269 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-5 | 270 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 298 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 300 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MNVSLLNVET EDAFWGLLEF AANNDLEGFK KYVDHEPSSV DEVGLWYGRQ KGSNKMIVQQ 60 MTPLMVAATY GSTDVLKLIV SLPEVDVNRS AASGGSVNAI DIVQLLLAAG ADPNLVDANG 120 RRPLDVLFVS PKLQGMKYSL QVLLATDTSF EEEHNLRISI APSNSNSPPL SPSHLNGLPC 180 SPELVPSPKG GKSNDVPASS VPEKKEYPID PSLPDIKNSI YSTDEFRMFS FKVRPCSRAY 240 SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ 300 YRTRLCKDGT SCNRRVCFFA HTTEELRPLY VSTGSAVPSP RSSNSAANAM DFAAAMSLLP 360 GSPSSVPLMS PSPFTPPMSP STNGISNTGW PSQPNVPALH LPGSNFQSSR LRSSLNARDI 420 PHEDLSLFAD IDVQQQQILA ELSLMSQPSI NTNLLNRSVR SKTLTPSNLD DIFSAESSSP 480 RYSEQALASA VFSPTHKSAI LNQFQQQQQT MLSPIKTSFS PRNGDHPIMQ APYGVPTSGR 540 MSPRTVEPIS PMSARISMLA RQEKQHHQFR SLSSRDLGSN AAAAVASLEE NWSKWGSPNG 600 PAEWAVGADD FGKLKRSSSF ELLNNGEEPD LSWVQSLVKE SAQDAKDNSA PHVAGAVNTG 660 PSSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075220.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2G9HGR0 | 0.0 | A0A2G9HGR0_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | XP_006421436.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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