PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 838aa MW: 93671.6 Da PI: 9.8964 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.2e-07 | 214 | 235 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr+f + G Ck+G++C+F H++ XP_011074773.1 214 ICRDFTA-GRCKRGSQCRFFHPK 235 7******.*************96 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 298 | 319 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtC+ Gd+CkF+H XP_011074773.1 298 VPCKDFMQ-GTCRWGDTCKFSHH 319 69******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.079 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-5 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 213 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.281 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 294 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 295 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 298 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 299 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 345 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0089 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MGERRKRKSL WDKEEETKHF SELSEHNSLT GKEHSSHDIG RYHEYSASRA YTAPRSRDQS 60 GQPSRESTEA NPVAPVNDSL VKSRQNASEG KEIGEGNRYY QNLSPGFDGA ERRKYNHSPE 120 NDRSHSRRYL GRGRSRSRSR SRTRGRSRSR SLSRGRGRER GRGSSRSRSR SRSRSRSDGS 180 ARDQTRSPTP VRDYRHQSYG WSDRKSIPDK SSQICRDFTA GRCKRGSQCR FFHPKNVSHG 240 DGALEADKTS ESLRNRAERG HNSKHSYSRG PGSDLQDDAS VPYHGKNDQS QNKSKSAVPC 300 KDFMQGTCRW GDTCKFSHHF ASDETFGKGT RLASIGKDIE HQPYRNEKPL CKYFAAGKCD 360 RHNCRFSHED PMFKGLEGRQ GEVTDNHSLH DKSNDWSAWS DATRISNNVK PAGAGETSVT 420 NSTGNTNNKS WGIPEWPDNS TSPNKRPSPP EASGGDAGIA ESIGKENMAN KKEHLILHGL 480 QLQNQDGYSV VEGQNTLQED RSFSLKAWQQ NVTPASHIHQ QDDGVSENNQ VSSFQDVLNE 540 VKDSRNTTHP IRFSGKNSNQ NVENVFPGHS SISNETDSGQ NMLCSNPSNG FSGDLSGPGS 600 LNFQFQMQNH QKAVEIPGML DTKVSQILPN LLTSLHSAQL TNSQVTIAGQ QVAPVTKPSV 660 FMAQRFVNEQ SERNDNTELS NPRGTTPSFS DNSKVIHPRS PKQKQETVLA SSDVNESDRA 720 IGDESKGIQD NKHSETMDGH GKAEESNANK DDKAMRIFKN SLIEFVKDIL KPTWKEGKMS 780 REVHKTIVKK VVDKVTGTIQ VDHIPKTQEK VDQYLSYSKP KIAKLVQAYV GRCLKTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 175 | RSRSRSRSRSR |
2 | 167 | 175 | RSRSRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074773.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_011074774.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_011074775.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_020548217.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
TrEMBL | A0A2G9H024 | 0.0 | A0A2G9H024_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03235.1.p | 1e-135 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-12 | C3H family protein |