PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074630.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SRS

Protein Properties

Length: 300aa MW: 33290.6 Da PI: 6.887

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	189.8	9.8e-59	102	241	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaakrre+qqq+ ++ ++ +++ + +++++l + + + + XP_011074630.1 102 AGVNCQDCGNQAKKDCVHMRCRTCCKSRGFPCQTHVKSTWVPAAKRREKQQQQPGSNLQQDQQQLTVGGENPKRL---------RENYPGGG--F 185 5689*******************************************99999987777666655555555544.........22222222..2 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++lP+ev+s+a+frcv+vs+ dd+ee++aYqtav+igGhvfkGiLydqG+e+ XP_011074630.1 186 RELGRHLPPEVNSPALFRCVKVSATDDAEEHFAYQTAVNIGGHVFKGILYDQGPES 241 233467**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-61	103	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-27	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-25	191	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSEFFSLGGG KEQDQDQQTD NNNSLFLFKN EEIYNKGFEL WQQYNQLHQQ RLVSQQQQQH 60 HSIQDVHFSI GPSNIGDEPS DYSYGSAAGF RVMNQGRGKN DAGVNCQDCG NQAKKDCVHM 120 RCRTCCKSRG FPCQTHVKST WVPAAKRREK QQQQPGSNLQ QDQQQLTVGG ENPKRLRENY 180 PGGGFRELGR HLPPEVNSPA LFRCVKVSAT DDAEEHFAYQ TAVNIGGHVF KGILYDQGPE 240 SQYSGGGGES SSACAGSSQQ SHDLITATTN QNVTMLDPSI YPPHLSGFMA GTQFFPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ063128	2e-56	KJ063128.1 Sesamum indicum clone TilSSR_34329 microsatellite Sesame_34329 sequence.
GenBank	KJ063129	2e-56	KJ063129.1 Sesamum indicum clone TilSSR_34330 microsatellite Sesame_34330 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074630.1	0.0	protein SHI RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9LQZ5	4e-71	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2Z7AIB3	1e-128	A0A2Z7AIB3_9LAMI; SHI-related sequence 7
STRING	Migut.N03122.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-65	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]