PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074465.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 278aa    MW: 31802.3 Da    PI: 9.2643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1339122191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefe 91 
                     ffkvl     +ks+ l+lp  f+++ +g+   s +  +++ +  +W++++   k+++++++  + W++F + ++L +gDf+vF+++g+++f+
  XP_011074465.1  39 FFKVL--LPGFKSK-LWLPPAFCANASGE--FSAEAAVTT-QLGTWKIEV--GKCGEKFYFHgGSWNRFIQGHELSVGDFIVFEHSGNMRFS 122
                     78888..7788887.********666655..667777666.6679*****..9999996665166********************9999884 PP
2B351.22.2e-161832591586
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      l++p    + +++ k+es  l+++ ++ r+W vkl++     +++++r v+tkGW+eF+++n++k gD ++F+ ++
  XP_011074465.1 183 HLYIPVGIWRPNDMHKKESAILRIRGSDQREWPVKLRFykdpsQGRKDRLVMTKGWREFCSSNNIKKGDDCTFEIMD 259
                     36999999999988999999****************9989887777778*************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.88436129IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-1437131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-1338131IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-1039126No hitNo description
PfamPF023622.2E-1039122IPR003340B3 DNA binding domain
SMARTSM010194.0E-939129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-16161273IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-12162256No hitNo description
SuperFamilySSF1019361.57E-14162259IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.012164265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.434169277IPR003340B3 DNA binding domain
PfamPF023626.5E-14183259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDQFPSCSFS YKLPHTRDVC VLYISWGDTR KQMNSSMKFF KVLLPGFKSK LWLPPAFCAN  60
ASGEFSAEAA VTTQLGTWKI EVGKCGEKFY FHGGSWNRFI QGHELSVGDF IVFEHSGNMR  120
FSATLFGLSA CEKTFPPNST VPQNDEKQVE SWTNSSHCRR MPPFRKTIAA YSLSDHRLSG  180
QPHLYIPVGI WRPNDMHKKE SAILRIRGSD QREWPVKLRF YKDPSQGRKD RLVMTKGWRE  240
FCSSNNIKKG DDCTFEIMDT AFGESNDVVI MNVTIHAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074465.10.0B3 domain-containing protein REM5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-18B3 family protein