PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074330.1
Common NamebHLH
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 405aa    MW: 44040.9 Da    PI: 6.2505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10248296355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_011074330.1 248 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 296
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17243312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-11243300No hitNo description
PROSITE profilePS5088815.472245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16245313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7248296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDSEEMGDRV FQHRNSSSIL NCPSSVMATT SISDNVAGMS ICSESMFKPP NGIDPFYSSS  60
GWDPVISQDQ SGNFGNSSMV LQNEFANPNY PVLLENQTMG SSSHLVHFPS DSGLVGMVPK  120
IPSFGSGSFS EIVSSFGHSN FAQNNGAGVQ NTVKNVEDAQ DHRQDSENGV LGASPNGKRK  180
RKNVEVEKQK DQTRDLAELP KEYDEKKNSG PSSRSRQAVK EAKDNSSGAE ASKENYIHVR  240
AKRGQATNSH SLAERVRRER ISERMRLLQE LVPGCNKITG KAVMLDEIIN YVQSLQQQVE  300
FLSMKLATVN PELNVDIERL LSKDILHSRG SNATALGIGP GLSSSHPFQG LPQGTLNAFP  360
GTAPQFQSLP QNLWNNELQN ILQNGYDSNP SVGSLGPSGL SKMEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3975680.0EF397568.1 Sesamum indicum basic helix-loop-helix protein (bHLH) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074329.10.0transcription factor bHLH74
TrEMBLA3FM280.0A3FM28_SESIN; Basic helix-loop-helix protein
STRINGXP_004290997.11e-154(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-73bHLH family protein
Publications ? help Back to Top
  1. Kim MJ,Kim JK,Shin JS,Suh MC
    The SebHLH transcription factor mediates trans-activation of the SeFAD2 gene promoter through binding to E- and G-box elements.
    Plant Mol. Biol., 2007. 64(4): p. 453-66
    [PMID:17420955]