PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 29022.1 Da PI: 9.7622 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.3e-07 | 109 | 128 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ XP_011074196.1 109 FSCHICNKTFNRYNNLQMHM 128 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00087 | 193 | 215 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cgk+ k + ++H +++ XP_011074196.1 193 YSCRKCGKCLAVKGDWRTHEKNC 215 99*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.55E-6 | 100 | 132 | No hit | No description |
SMART | SM00355 | 0.083 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 109 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 156 | 188 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 100 | 193 | 213 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEGSGSFCFS PNANSLPSTS TAVVQTFDFF AKKTTSASNK NVVDRVGESN VVVDENEDSV 60 VALRIGLPSF CNKGVINSSD YGKKTANSAA ATQYWIPTPA QIVVGFTHFS CHICNKTFNR 120 YNNLQMHMWG HGSEFRRGPD SLKGSQPRAM LGIPCYCCQE GCKNNINHPR AKPLKDFRTL 180 QTHYKRKHGL KRYSCRKCGK CLAVKGDWRT HEKNCGKRWL CICGSDFKHK RSLKDHVASF 240 GSGHGPSCPP TFDRVDGKFL V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074196.1 | 0.0 | protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q8VWG3 | 1e-104 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A2G9HH99 | 1e-127 | A0A2G9HH99_9LAMI; Uncharacterized protein | ||||
STRING | XP_009614226.1 | 1e-124 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13264 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-105 | C2H2 family protein |
Publications ? help Back to Top | |||
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