PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073449.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 767aa    MW: 84324.1 Da    PI: 5.8749
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.1e-16474512240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  XP_011073449.1 474 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 512
                     589**********************************96 PP
2TCR51.12.6e-16557595139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_011073449.1 557 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 595
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-18473514IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.01474597IPR005172CRC domain
PfamPF036386.8E-12476511IPR005172CRC domain
SMARTSM011147.5E-18557598IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.5E-12559595IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MREESSEEEM DVMDTPERVK NNQITASVSK FEDSPVFNFL NSLSPIQPVK SIHITQTINP  60
LSFASLPSVF TSPHVGSLRE SRIPRRHQLS DPSKPEFSSD NGSVIVDRNK GKMDTNKLDE  120
QEENLDPGAS NGQVAGEPSC EFAENFQYDR DSLKAKHVEE HACNSSTLVP LVEKTSLRQL  180
YGGEVNLEAV SQIDQHKEAA SCDWESLISD TSDLLNLESP NNTESFEKSV DPATTFYRSI  240
KNAMQNMHSI CPVVSGEQVG GRSEPENLLT QPGEGRESMD AESHDIIAGS SITDPSEKME  300
YEHLSGLYRG MRRRCLVFEM AGVRSKHLEE NSGSDSSVLP QFDGNTTANL QLVPTKRGND  360
SSCRVLPGIG LHLNALAATP KDYKIVNHEA SASGRLLIGP SSSSNFHHPT SDQELFSNIL  420
ADNLMEREID TVESVGLPVE DPCQKSGYMA NEEINQCSPK KKRRRLEQGG EAEACKRCNC  480
KKSKCLKLYC ECFAAGVYCV EPCACIDCFN KPVHEDTVLA TRKQIESRNP LAFAPKVIRA  540
SDSRPEEDFS KTPASARHKR GCNCKKSGCL KKYCECYQGG VGCSINCRCE GCKNAFGRKD  600
GSGVLGTDHE LEEDELDTTE RAVLDGDSQR TTTQSDFKQS MDSAPPATPS RTGRQLVQPF  660
SSKRKPPRSS SFPSISSTSG FPASQPFGKS SFFPPPPKFD KHFDCVMEDE VPEFLQGGSP  720
VGGIKSSSPN QKRVSPPQRM ETSPGLRSSR KLILRSIPSF PSLTTNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1847859414120Protein lin-54 homolog
5fd3_B3e-1847859414120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458465PKKKRRRL
2459464KKKRRR
3461465KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073449.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A2G9GVD90.0A0A2G9GVD9_9LAMI; Metallothionein-like protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-135Tesmin/TSO1-like CXC domain-containing protein